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31 DNA sequencies from the matK gene analysed by the DNAML programme (PHYLIP)
85 other trees analysed by DNAcomp some more reasonable than the tree below
31 DNA seq input file for PHYLIP
Analysed by Hans Eiberg:
Materials: From Biobase
10 sequencies from Katherine A Kron and
21 sequencies (marked with ">" ) from from Kurashige Y, Mine,M., Kobayashi,N.,
Handa,T., Takayanagi,K. and Yukawa,T. (J.of Japanese Bot. (1998) In press)
-----------------
Nucleic acid sequence Maximum Likelihood method, version 3.572c
Empirical Base Frequencies:
A 0.31331
C 0.16148
G 0.16509
T(U) 0.36013
Transition/transversion ratio = 2.000000
(Transition/transversion parameter = 1.772220)
+>pentaphyllum
!
! +>albiflorum
! !
+-29 ! +>wadanum
! ! ! +-28
! ! ! +-26 +>tashiroi
! ! ! ! !
! +-11 ! +>farrerae
! ! +-20
! ! ! ! +>tsusiophyllum
! ! ! ! !
! ! ! +-27 +kaempferi
! ! ! ! +-14
! ! ! ! ! ! +>indicum
! +--9 +--5 +-21
! ! ! +>kaempferi
! ! !
! ! +kiusianum
! !
! ! +>ovatum
! ! +-17
! +--7 +hongkongense
! !
! +R ovatum
!
! +molle
! +-15
! ! +>luteum
! !
! +--1 +>santapaui
! ! ! +-----------------------------------23
! ! ! ! +>jarvaicum
! ! +-22
! ! ! +>ponticum
! +-16 +-18
! ! ! ! +grande
! ! ! +--4
! ! ! +falconeri
! +--8 !
! ! ! + >nipponicum
! ! !
! ! ! + >albrechtii
! ! +-10
--2--3 + Ledum palustre (R. tomentosum)
! !
! ! + >stamineum
! ! +-25
! ! ! + >semibarbatum
! +-24
! ! + >canadense
! ! !
! +-12 + >primuliflorum
! ! +-19
! ! ! + hippophaeroides
! +--6
! ! + >ferruginium
! +-13
! + edgeworthii
!
+>camtschaticum
remember: (although rooted by outgroup) this is an unrooted tree!
Ln Likelihood = -5339.07817
Examined 2091 trees
Between And Length Approx. Confidence Limits
------- --- ------ ------- ---------- ------
2 29 0.00003 ( zero, 0.00171)
29 >pentaph 0.00326 ( 0.00044, 0.00615) **
29 11 0.00063 ( zero, 0.00189) **
11 >albifl 0.00264 ( 0.00006, 0.00522) **
11 9 0.00003 ( zero, infinity)
9 20 0.00198 ( zero, 0.00423) **
20 26 0.00331 ( 0.00041, 0.00621) **
26 28 0.00003 ( zero, infinity)
28 >wadanum 0.00064 ( zero, 0.00191) **
28 >tashiroi 0.00003 ( zero, infinity)
26 >farreuae 0.00066 ( zero, 0.00196) **
20 27 0.00198 ( zero, 0.00423) **
27 >tsusioph 0.00132 ( zero, 0.00315) **
27 5 0.00199 ( zero, 0.00423) **
5 14 0.00003 ( zero, infinity)
14 kaempferi 0.00264 ( 0.00006, 0.00523) **
14 21 0.00005 ( zero, 0.00135)
21 >indicum 0.00061 ( zero, 0.00190)
21 >kaempfe 0.00003 ( zero, infinity)
5 R kiusian 0.00132 ( zero, 0.00314) **
9 7 0.00592 ( 0.00207, 0.00982) **
7 17 0.00003 ( zero, 0.00154)
17 >ovatum 0.00005 ( zero, infinity)
17 R hongkon 0.00464 ( 0.00121, 0.00807) **
7 R ovatum 0.00794 ( 0.00347, 0.01247) **
2 3 0.00069 ( zero, 0.00201) **
3 8 0.00063 ( zero, 0.00189) **
8 16 0.00069 ( zero, 0.00201) **
16 1 0.00064 ( zero, 0.00192) *
1 15 0.00597 ( 0.00207, 0.00989) **
15 R molle 0.00665 ( 0.00252, 0.01077) **
15 >luteum 0.00264 ( 0.00006, 0.00525) **
1 22 0.00080 ( zero, 0.00258)
22 23 0.61810 ( 0.55630, 0.68569) **
23 >santapau 0.00701 ( 0.00222, 0.01190) **
23 >jarvaicu 0.00361 ( zero, 0.00774) **
22 18 0.00117 ( zero, 0.00316)
18 >ponticum 0.00532 ( 0.00163, 0.00900) **
18 4 0.00327 ( 0.00045, 0.00619) **
4 R grande 0.00270 ( 0.00000, 0.00529) **
4 falconeri 0.00063 ( zero, 0.00190) **
16 >nipponic 0.00398 ( 0.00079, 0.00716) **
8 10 0.00136 ( zero, 0.00321) **
10 >albrecht 0.00129 ( zero, 0.00311) **
10 ledum p 0.00805 ( 0.00347, 0.01258) **
3 24 0.00005 ( zero, infinity)
24 25 0.00198 ( zero, 0.00423) **
25 >stamineum 0.00261 ( 0.00009, 0.00521) **
25 >semibarb 0.00331 ( 0.00041, 0.00621) **
24 12 0.00061 ( zero, 0.00188) *
12 >canaden 0.00469 ( 0.00118, 0.00812) **
12 6 0.00399 ( 0.00081, 0.00719) **
6 19 0.00132 ( zero, 0.00315) **
19 >primuli 0.00200 ( zero, 0.00424) **
19 R hippopha 0.00132 ( zero, 0.00316) **
6 13 0.00061 ( zero, 0.00189) *
13 >ferrugin 0.00204 ( zero, 0.00431) **
13 R edgewort 0.00941 ( 0.00443, 0.01429) **
2 >camtschat 0.01883 ( 0.01185, 0.02584) **
* = significantly positive, P < 0.05
** = significantly positive, P < 0.01