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31 DNA sequencies from the matK gene analysed by the DNAML programme (PHYLIP)

85 other trees analysed by DNAcomp some more reasonable than the tree below 31 DNA seq input file for PHYLIP Analysed by Hans Eiberg: Materials: From Biobase 10 sequencies from Katherine A Kron and 21 sequencies (marked with ">" ) from from Kurashige Y, Mine,M., Kobayashi,N., Handa,T., Takayanagi,K. and Yukawa,T. (J.of Japanese Bot. (1998) In press) ----------------- Nucleic acid sequence Maximum Likelihood method, version 3.572c Empirical Base Frequencies: A 0.31331 C 0.16148 G 0.16509 T(U) 0.36013 Transition/transversion ratio = 2.000000 (Transition/transversion parameter = 1.772220) +>pentaphyllum ! ! +>albiflorum ! ! +-29 ! +>wadanum ! ! ! +-28 ! ! ! +-26 +>tashiroi ! ! ! ! ! ! +-11 ! +>farrerae ! ! +-20 ! ! ! ! +>tsusiophyllum ! ! ! ! ! ! ! ! +-27 +kaempferi ! ! ! ! +-14 ! ! ! ! ! ! +>indicum ! +--9 +--5 +-21 ! ! ! +>kaempferi ! ! ! ! ! +kiusianum ! ! ! ! +>ovatum ! ! +-17 ! +--7 +hongkongense ! ! ! +R ovatum ! ! +molle ! +-15 ! ! +>luteum ! ! ! +--1 +>santapaui ! ! ! +-----------------------------------23 ! ! ! ! +>jarvaicum ! ! +-22 ! ! ! +>ponticum ! +-16 +-18 ! ! ! ! +grande ! ! ! +--4 ! ! ! +falconeri ! +--8 ! ! ! ! + >nipponicum ! ! ! ! ! ! + >albrechtii ! ! +-10 --2--3 + Ledum palustre (R. tomentosum) ! ! ! ! + >stamineum ! ! +-25 ! ! ! + >semibarbatum ! +-24 ! ! + >canadense ! ! ! ! +-12 + >primuliflorum ! ! +-19 ! ! ! + hippophaeroides ! +--6 ! ! + >ferruginium ! +-13 ! + edgeworthii ! +>camtschaticum remember: (although rooted by outgroup) this is an unrooted tree! Ln Likelihood = -5339.07817 Examined 2091 trees Between And Length Approx. Confidence Limits ------- --- ------ ------- ---------- ------ 2 29 0.00003 ( zero, 0.00171) 29 >pentaph 0.00326 ( 0.00044, 0.00615) ** 29 11 0.00063 ( zero, 0.00189) ** 11 >albifl 0.00264 ( 0.00006, 0.00522) ** 11 9 0.00003 ( zero, infinity) 9 20 0.00198 ( zero, 0.00423) ** 20 26 0.00331 ( 0.00041, 0.00621) ** 26 28 0.00003 ( zero, infinity) 28 >wadanum 0.00064 ( zero, 0.00191) ** 28 >tashiroi 0.00003 ( zero, infinity) 26 >farreuae 0.00066 ( zero, 0.00196) ** 20 27 0.00198 ( zero, 0.00423) ** 27 >tsusioph 0.00132 ( zero, 0.00315) ** 27 5 0.00199 ( zero, 0.00423) ** 5 14 0.00003 ( zero, infinity) 14 kaempferi 0.00264 ( 0.00006, 0.00523) ** 14 21 0.00005 ( zero, 0.00135) 21 >indicum 0.00061 ( zero, 0.00190) 21 >kaempfe 0.00003 ( zero, infinity) 5 R kiusian 0.00132 ( zero, 0.00314) ** 9 7 0.00592 ( 0.00207, 0.00982) ** 7 17 0.00003 ( zero, 0.00154) 17 >ovatum 0.00005 ( zero, infinity) 17 R hongkon 0.00464 ( 0.00121, 0.00807) ** 7 R ovatum 0.00794 ( 0.00347, 0.01247) ** 2 3 0.00069 ( zero, 0.00201) ** 3 8 0.00063 ( zero, 0.00189) ** 8 16 0.00069 ( zero, 0.00201) ** 16 1 0.00064 ( zero, 0.00192) * 1 15 0.00597 ( 0.00207, 0.00989) ** 15 R molle 0.00665 ( 0.00252, 0.01077) ** 15 >luteum 0.00264 ( 0.00006, 0.00525) ** 1 22 0.00080 ( zero, 0.00258) 22 23 0.61810 ( 0.55630, 0.68569) ** 23 >santapau 0.00701 ( 0.00222, 0.01190) ** 23 >jarvaicu 0.00361 ( zero, 0.00774) ** 22 18 0.00117 ( zero, 0.00316) 18 >ponticum 0.00532 ( 0.00163, 0.00900) ** 18 4 0.00327 ( 0.00045, 0.00619) ** 4 R grande 0.00270 ( 0.00000, 0.00529) ** 4 falconeri 0.00063 ( zero, 0.00190) ** 16 >nipponic 0.00398 ( 0.00079, 0.00716) ** 8 10 0.00136 ( zero, 0.00321) ** 10 >albrecht 0.00129 ( zero, 0.00311) ** 10 ledum p 0.00805 ( 0.00347, 0.01258) ** 3 24 0.00005 ( zero, infinity) 24 25 0.00198 ( zero, 0.00423) ** 25 >stamineum 0.00261 ( 0.00009, 0.00521) ** 25 >semibarb 0.00331 ( 0.00041, 0.00621) ** 24 12 0.00061 ( zero, 0.00188) * 12 >canaden 0.00469 ( 0.00118, 0.00812) ** 12 6 0.00399 ( 0.00081, 0.00719) ** 6 19 0.00132 ( zero, 0.00315) ** 19 >primuli 0.00200 ( zero, 0.00424) ** 19 R hippopha 0.00132 ( zero, 0.00316) ** 6 13 0.00061 ( zero, 0.00189) * 13 >ferrugin 0.00204 ( zero, 0.00431) ** 13 R edgewort 0.00941 ( 0.00443, 0.01429) ** 2 >camtschat 0.01883 ( 0.01185, 0.02584) ** * = significantly positive, P < 0.05 ** = significantly positive, P < 0.01